Wishart Node of The Metabolomics Innovation Centre

Databases

Check out the free databases courtesy of The Wishart Node. Mouse over each database to learn more.

Milk Composition Database
The Milk Composition Database (MCDB) contains detailed information about small molecule metabolites found in cow milk. It has complete list of metabolite names, metabolite structures, level of verification (confirmed or probable), reference spectra (NMR, GC–MS and LC–MS) and citations for all (to the best of our knowledge) of the milk compounds that have been identified, quantified or reported.
MCDB
FooDB is the world’s largest and most comprehensive resource on food constituents, chemistry and biology. It provides information on both macronutrients and micronutrients, including many of the constituents that give foods their flavor, color, taste, texture and aroma.
FooDB
The NP-MRD is an open-access, web-enabled, FAIR-compliant database containing NMR spectra and structure data for all known natural products.
NP-MRD
DrugBank
DrugBank is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. Each DrugCard entry contains more than 100 data fields with half of the information being devoted to drug/chemical data and the other half devoted to drug target or protein data.
DrugBank
Exposome Explorer is dedicated to biomarkers of exposure to environmental risk factors for diseases. Find detailed information on the nature of biomarkers, populations and subjects where measured, samples analyzed, methods used for biomarker analyses, concentrations in biospecimens, correlations with external exposure measurements, and biological reproducibility over time.
Exposome Explorer
SMPDB is an interactive, visual database containing more than 30 000 small molecule pathways found in humans only. It is designed to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics and systems biology. It provides detailed, fully searchable, hyperlinked diagrams of human metabolic pathways, metabolic disease pathways, metabolite signaling pathways and drug-action pathways.
SMPDB
Bovine Database
The Bovine Metabolome Database contains detailed information about small molecule metabolites found in beef and dairy cattle. BRMDB has been integrated into BMDB. The Bovine Rumen Metabolome Database contains tables of ruminal fluid metabolites or metabolite species from the bovine ruminal fluid metabolome.
BMDB and BRMDB
The Toxic Exposome Database , also known as the Toxin and Toxin Target Database is a unique bioinformatics resource that combines detailed toxin data with comprehensive toxin target information. The database currently houses over 3,600 toxins described by over 41,000 synonyms, including pollutants, pesticides, drugs, and food toxins, linking to corresponding toxin target records.
T3DB
Phenol-Explorer is the first comprehensive database on polyphenol content in foods. The database contains more than 35,000 content values for 500 different polyphenols in over 400 foods derived from the systematic collection of more than 60,000 original content values found in more than 1,300 scientific publications.
Phenol-Explorer
The Yeast Metabolome Database is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast). This database covers metabolites described in textbooks, scientific journals, metabolic reconstructions and other electronic databases.
YMDB
The Alberta Food Composition Database (AFCDB) is the first comprehensive resource on food constituents, chemistry and biology dedicated to major Alberta-grown produce. It provides information on both macronutrients and micronutrients, including many of the constituents that give foods their flavor, color, taste, texture and aroma.
AFCDB
The E. coli Metabolome Database is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes "original” data compiled by members of the Wishart laboratory as well as material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases.
ECMDB
Contaminant DB
The ContaminantDB is a unique bioinformatics resource that combines detailed contaminant data from different online references and databases on contaminants.
Contaminant DB
MarkerDB
MarkerDB consolidates detailed information about human biomarkers. The database covers several types of biomarkers including small molecules, proteins, genetic markers and karyotypes. Several types of indications are covered including prognostic, diagnostic, predictive indications, as well as biomarkers of exposure and biomarkers for monitoring treatment progression.
MarkerDB
The Human Metabolome Database (HMDB) is a freely available database containing detailed information about small molecule metabolites found in the human body. It is designed to contain or link three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data. HMDB contains over 41,000 metabolite entries. HMDB also has specialized sub-databases that are listed below.
hmdb
CSF Metabolome Database
The CSF Metabolome Database contains detailed information about 468 small molecule metabolites found in human CSF along with 1650 concentration values. The data tables may be sorted and searched by concentration values and ranges.
CSF
Fecal Metabolome Database
The Fecal Metabolome Database contains detailed information about many small molecule metabolites found in human feces and many concentration values. Each metabolite entry contains more than 110 data fields and many of them are hyperlinked to other databases.
Fecal Metabolome Database
Saliva Metabolome Database
The Saliva Metabolome Database contains detailed information about many small molecule metabolites found in human saliva and many concentration values. Each metabolite entry contains more than 110 data fields and many of them are hyperlinked to other databases (KEGG, PubChem, ChEBI, Chemspider, DrugBank, PDB and Uniprot).
Saliva Database
Serum Metabolome Database
The Serum Metabolome Database contains detailed information about 4651 small molecule metabolites found in human serum along with 10895 concentration values.
Serum Metabolome Database
Sweat Metabolome Database
The Sweat Metabolome database is a freely available electronic database containing detailed information about many small molecule metabolites found in human sweat and concentration values.
Sweat Metabolome Database
Urine Metabolome Database
The Urine Metabolome Database contains detailed information about small molecule metabolites found in human urine along with concentration values. The data tables may be sorted and searched by concentration values and ranges.
Urine Metabolome Database